PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13984.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 357aa    MW: 40378.1 Da    PI: 9.8992
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13984.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-16453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd ll  +vkq+G++ W++++++m+  ++R +k+c +rw +yl
       KHN13984.1  4 RQRWRAEEDALLRAYVKQYGPREWNLVSQRMNtpLNRDAKSCLERWKNYL 53
                     89**********************************************97 PP

2Myb_DNA-binding34.45.1e-1159103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T+eE+ l +++ + +G++ Wk+Ia+ ++ gRt+k +  +w  +
       KHN13984.1  59 KGSLTEEEQRLVINLQATHGNK-WKKIAAQVP-GRTAKRLGKWWEVF 103
                      6788******************.*********.*****999999766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.01157IPR017930Myb domain
SMARTSM007171.1E-13355IPR001005SANT/Myb domain
SuperFamilySSF466891.21E-21498IPR009057Homeodomain-like
CDDcd001674.45E-9653No hitNo description
Gene3DG3DSA:1.10.10.601.4E-20660IPR009057Homeodomain-like
PfamPF139212.7E-14768No hitNo description
PROSITE profilePS5129417.82258108IPR017930Myb domain
SMARTSM007171.7E-958106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-1561102IPR009057Homeodomain-like
CDDcd001671.98E-663104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MKDRQRWRAE EDALLRAYVK QYGPREWNLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG  60
SLTEEEQRLV INLQATHGNK WKKIAAQVPG RTAKRLGKWW EVFKEKQQRE TKGNSCTIDP  120
ISDSKYEHIL ESFAEKLVKE RPSPSFVMAT SNSSFLHADA PAPPPALLPS WLSNSNGTAP  180
VRPPSPSVTL SLSPSTVAAP PPWLQPPVRG PDNAAPLVLG NVAPHGAVLA FGENMVMSEL  240
VECCKELDEV HHALAGHKKE AAWRLSRVEL QLESEKAGRR REKMEEIEAK IKALREEQTA  300
ALDRIEAEYR EQLAGLRRDA ESKEQKLAEQ WAAKHLRLTK FLEQVGCRSR LTEPNGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-167921092B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7378420.0KC737842.1 Glycine max PHAN3 (PHAN3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276745.10.0uncharacterized protein LOC100819082
RefseqXP_003552171.10.0PREDICTED: uncharacterized protein LOC100819082 isoform X1
RefseqXP_006602592.10.0PREDICTED: uncharacterized protein LOC100819082 isoform X1
SwissprotO809311e-158AS1_ARATH; Transcription factor AS1
TrEMBLA0A0B2Q1T60.0A0A0B2Q1T6_GLYSO; Transcription factor AS1
TrEMBLK7MT370.0K7MT37_SOYBN; MYB/HD-like transcription factor
STRINGGLYMA18G39771.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25973369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.11e-132MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]